Genome

  We collected the Latin names and articles of all recently published Fabaceae plants from plaBiPD (https://www.plabipd.de) and obtained the genomic data of related Fabaceae plants, such as the genome sequence, GFF file, nucleotide (CDS), and protein (PEP) sequences of each Fabaceae plant. Most of the datasets were obtained from NCBI (https://www.ncbi.nlm.nih.gov), GIGA (http://gigadb.org), and other related databases. We obtained plants images and related introduction information from Wikipedia (http://wikipedia.org). We used the Perl programming language to process the raw data to prevent redundant sequences from being included in subsequent analyses. We obtained 136 genomes of 59 Fabaceae plants.
  Genomics, or genomics, is the study of the biological genome and how genes are used. Most of the Fabaceae genomic data were obtained from NCBI. We obtained the information of relevant genomes through scripts, organized and collected, and finally stored 136 legume genomes into LGRPv2. A total of 22 columns of genome information covering genome, family species, cds, pep, gff files, genome size and other information.

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Genome Subfamily Tribs Genus Data link CDS PEP GFF3 Time GenSize ChrNum ScaNum ScaN50Num ScaL50Num ConNum ConN50Num ConL50Num GC percent Level GenNum ProNum NoProNum
Arctium lappa Carduoideae Cardueae Arctium CDS PEP GFF3 2021 1.79 Gb 2n=36 --- --- --- --- --- --- --- chromosome --- --- ---
Arctium lappa Carduoideae Cardueae Arctium CDS PEP GFF3 2022 1.7 Gb 2n=36 --- --- --- --- --- --- --- chromosome --- --- ---
Arctium minus Carduoideae Cardueae Arctium CDS NA GFF3 2023 1.9 Gb 2n=36 --- --- --- --- --- --- --- chromosome --- --- ---
Arctium minus Carduoideae Cardueae Arctium NA NA NA 2023 465.4 Mb 2n=36 --- --- --- --- --- --- --- Contig --- --- ---
Carthamus tinctorius Carduoideae Cardueae Carthamus CDS PEP GFF3 2021 1.06 Gb 2n=24 --- --- --- --- --- --- --- chromosome --- --- ---
Carthamus tinctorius Carduoideae Cardueae Carthamus NA NA NA 2016 661.9 Mb 2n=24 --- --- --- --- --- --- --- scaffold --- --- ---
Carthamus tinctorius Carduoideae Cardueae Carthamus CDS PEP GFF3 2023 1.17Gb 2n=24 --- --- --- --- --- --- --- chromosome --- --- ---
Saussurea involucrata Carduoideae Cardueae Saussurea CDS NA GFF3 2023 2452Mb 2n=32 --- --- --- --- --- --- --- chromosome --- --- ---
Saussurea bogedaensis Carduoideae Cardueae Saussurea NA NA NA 2024 --- --- --- --- --- --- --- --- --- chromosome --- --- ---
Silybum marianum Carduoideae Cardueae Silybum NA NA NA 2016 1.5 Gb 2n=34 --- --- --- --- --- --- --- Contig --- --- ---
Silybum marianum Carduoideae Cardueae Silybum NA NA NA 2024 694.4 Mb 2n=34 --- --- --- --- --- --- --- chromosome --- --- ---
Cynara cardunculus Carduoideae Cardueae Cynara CDS PEP GFF3 2018 725 Mb 2n=34 --- --- --- --- --- --- --- chromosome --- --- ---
Cynara cardunculus Carduoideae Cardueae Cynara NA NA NA 2024 859.1 Mb 2n=34 --- --- --- --- --- --- --- Scaffold --- --- ---
Cynara cardunculus Carduoideae Cardueae Cynara NA NA NA 2024 858 Mb 2n=34 --- --- --- --- --- --- --- Scaffold --- --- ---
Centaurea solstitialis Carduoideae Cardueae Centaurea CDS PEP GFF3 --- 765.1 Mb 2n=16 --- --- --- --- --- --- --- chromosome --- --- ---
Carduus pycnocephalus Carduoideae Cardueae Carduus NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Carduus pycnocephalus Carduoideae Cardueae Carduus NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Cichorium endivia Cichorioideae Cichorieae Cichorium CDS PEP GFF3 2022 887 Mb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Cichorium endivia Cichorioideae Cichorieae Cichorium NA NA NA 2022 --- --- --- --- --- --- --- --- --- chromosome --- --- ---
Cichorium intybus Cichorioideae Cichorieae Cichorium CDS PEP GFF3 2022 1.3 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Cichorium intybus Cichorioideae Cichorieae Cichorium CDS PEP GFF3 2023 919 Mb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Cichorium intybus Cichorioideae Cichorieae Cichorium NA NA NA 2023 1.8 Gb --- --- --- --- --- --- --- --- Scaffold --- --- ---
Lactuca saligna Cichorioideae Cichorieae Lactuca CDS PEP GFF3 2023 2.2 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca CDS PEP GFF3 2018 2.4 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca NA NA NA 2011 1.1 Gb 2n=18 --- --- --- --- --- --- --- Contig --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca NA NA NA 2017 2 Gb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca NA NA NA 2018 2.2 Gb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca NA NA NA 2023 --- --- --- --- --- --- --- --- --- --- --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca NA NA NA --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca NA NA NA 2024 --- --- --- --- --- --- --- --- --- Chromosome --- --- ---
Lactuca sativa Cichorioideae Cichorieae Lactuca NA NA NA 2024 --- --- --- --- --- --- --- --- --- Chromosome --- --- ---
Lactuca virosa Cichorioideae Cichorieae Lactuca CDS PEP GFF3 2023 3.4 Gb --- --- --- --- --- --- --- --- scaffold --- --- ---
Lactuca serriola Cichorioideae Cichorieae Lactuca NA NA NA --- 2.8 Gb --- --- --- --- --- --- --- --- Contig --- --- ---
Taraxacum koksaghyz Cichorioideae Cichorieae Taraxacum CDS PEP GFF3 2017 1.29 Gb 2n=16 --- --- --- --- --- --- --- Contig --- --- ---
Taraxacum koksaghyz Cichorioideae Cichorieae Taraxacum CDS PEP GFF3 2021 1.08 Gb 2n=16 --- --- --- --- --- --- --- chromosome --- --- ---
Taraxacum mongolicum Cichorioideae Cichorieae Taraxacum CDS PEP GFF3 2021 790Mb 3x=24 --- --- --- --- --- --- --- chromosome --- --- ---
Tanacetum coccineum Cichorioideae Cichorieae Taraxacum CDS PEP GFF3 2022 9.5 Gb --- --- --- --- --- --- --- --- scaffold --- --- ---
Tragopogon pratensis Cichorioideae Cichorieae Tragopogon NA NA NA 2024 --- --- --- --- --- --- --- --- --- Chromosome --- --- ---
Tragopogon pratensis Cichorioideae Cichorieae Tragopogon NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Pilosella piloselloides Cichorioideae Cichorieae Pilosella NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Tanacetum parthenium Anthemideae Anthemidinae Tanacetum NA NA NA 2024 --- --- --- --- --- --- --- --- --- Chromosome --- --- ---
Tanacetum parthenium Anthemideae Anthemidinae Tanacetum NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Tanacetum vulgare Anthemideae Anthemidinae Tanacetum NA NA NA 2024 --- --- --- --- --- --- --- --- --- Chromosome --- --- ---
Tanacetum vulgare Anthemideae Anthemidinae Tanacetum NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Artemisia annua Asteroideae Anthemideae Artemisia CDS PEP GFF3 2022 1.5 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Artemisia annua Asteroideae Anthemideae Artemisia NA NA NA 2020 1.8 Gb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Artemisia annua Asteroideae Anthemideae Artemisia CDS PEP GFF3 2018 1.8 Gb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Artemisia annua Asteroideae Anthemideae Artemisia NA NA NA 2024 1.5 Gb --- --- --- --- --- --- --- --- scaffold --- --- ---
Artemisia tridentata Asteroideae Anthemideae Artemisia NA NA NA 2022 4.2 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Artemisia tridentata Asteroideae Anthemideae Artemisia NA NA NA 2021 4.5 Gb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Artemisia tridentata Asteroideae Anthemideae Artemisia CDS PEP GFF3 --- 3.9 Gb --- --- --- --- --- --- --- --- chromosome --- --- ---
Artemisia tridentata Asteroideae Anthemideae Artemisia NA NA NA 2024 --- --- --- --- --- --- --- --- --- chromosome --- --- ---
Artemisia princeps Asteroideae Anthemideae Artemisia NA NA NA --- 591.2 Mb --- --- --- --- --- --- --- --- scaffold --- --- ---
Artemisia ludoviciana Asteroideae Anthemideae Artemisia NA NA NA --- 591.2 Mb --- --- --- --- --- --- --- --- scaffold --- --- ---
Artemisia argyi Asteroideae Anthemideae Artemisia CDS PEP GFF3 2023 3.89 Gb 2n=34 --- --- --- --- --- --- --- chromosome --- --- ---
Artemisia argyi Asteroideae Anthemideae Artemisia NA NA NA 2022 --- 2n=35 --- --- --- --- --- --- --- chromosome --- --- ---
Artemisia argyi Asteroideae Anthemideae Artemisia NA NA NA --- --- 2n=36 --- --- --- --- --- --- --- Scaffold --- --- ---
Artemisia argyi Asteroideae Anthemideae Artemisia NA NA NA --- --- 2n=36 --- --- --- --- --- --- --- Scaffold --- --- ---
Artemisia ifranensis Asteroideae Anthemideae Artemisia NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Chrysanthemum nankingense Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 --- 5.7 Gb --- --- --- --- --- --- --- --- Chromosome --- --- ---
Chrysanthemum nankingense Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 --- 3.5 Gb --- --- --- --- --- --- --- --- Chromosome --- --- ---
Chrysanthemum indicum Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 2018 3.07 Gb 2n=18 --- --- --- --- --- --- --- --- --- --- ---
Chrysanthemum indicum Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 2024 3.11 Gb 2n=18 --- --- --- --- --- --- --- --- --- --- ---
Chrysanthemum indicum Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 --- 6.18 Gb --- --- --- --- --- --- --- --- Chromosome --- --- ---
Chrysanthemum lavandulifolium Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 2021 3 Gb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Chrysanthemum lavandulifolium Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 2019 2.72 Gb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Chrysanthemum lavandulifolium Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 2022 2.7 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Chrysanthemum seticuspe Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 --- --- --- --- --- --- --- --- --- --- scaffold --- --- ---
Chrysanthemum makinoi Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 2022 3.19 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Chrysanthemum morifolium Asteroideae Anthemideae Chrysanthemum CDS PEP GFF3 2023 8.15 Gb 2n=54 --- --- --- --- --- --- --- chromosome --- --- ---
Glebionis coronaria Asteroideae Anthemideae Glebionis CDS PEP GFF3 2022 6.8 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Glebionis coronaria Asteroideae Anthemideae Glebionis CDS NA GFF3 2022 --- --- --- --- --- --- --- --- --- scaffold --- --- ---
Matricaria chamomilla Asteroideae Anthemideae Glebionis NA NA NA 2024 --- --- --- --- --- --- --- --- --- Chromosome --- --- ---
Matricaria chamomilla Asteroideae Anthemideae Glebionis NA NA NA 2024 --- --- --- --- --- --- --- --- --- scaffold --- --- ---
Matricaria chamomilla Asteroideae Anthemideae Glebionis NA NA NA 2024 --- --- --- --- --- --- --- --- --- Chromosome --- --- ---
Erigeron canadensis Asteroideae Astereae Erigeron CDS PEP GFF3 2020 426.2 Mb 2n=18 --- --- --- --- --- --- --- Chromosome --- --- ---
Erigeron canadensis Asteroideae Astereae Erigeron NA NA NA 2014 326.2 Mb 2n=18 --- --- --- --- --- --- --- Contig --- --- ---
Erigeron philadelphicus Asteroideae Astereae Erigeron NA NA NA 2022 619.6 Mb 2n=18 --- --- --- --- --- --- --- scaffold --- --- ---
Erigeron breviscapus Asteroideae Astereae Erigeron CDS PEP GFF3 2020 1.43 Gb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Erigeron breviscapus Asteroideae Astereae Erigeron NA NA NA --- 1.2 Gb --- --- --- --- --- --- --- --- Scaffold --- --- ---
Solidago caesia Asteroideae Solidagininae Solidago CDS NA GFF3 --- --- --- --- --- --- --- --- --- --- scaffold --- --- ---
Solidago azorica Asteroideae Solidagininae Solidago NA NA NA 2024 --- --- --- --- --- --- --- --- --- Scaffold --- --- ---
Solidago canadensis Asteroideae Solidagininae Solidago CDS PEP GFF3 --- 855 Mb 2n=18 --- --- --- --- --- --- --- chromosome --- --- ---
Mikania micrantha Asteroideae Eupatorieae Mikania CDS PEP GFF3 2019 1.8 Gb 2n=38 --- --- --- --- --- --- --- chromosome --- --- ---
Ageratina adenophora Asteroideae Eupatorieae Ageratina NA NA NA 2024 --- --- --- --- --- --- --- --- --- chromosome --- --- ---
Stevia rebaudiana Asteroideae Eupatorieae Stevia CDS PEP GFF3 2021 1405 Mb 2n=22 --- --- --- --- --- --- --- chromosome --- --- ---
Stevia rebaudiana Asteroideae Eupatorieae Stevia NA NA NA 2020 411.4 Mb 2n=22 --- --- --- --- --- --- --- scaffold --- --- ---
Bidens hawaiensis Asteroideae Coreopsideae Bidens NA NA NA 2022 3.5 Gb 2n=6x=72 --- --- --- --- --- --- --- Contig --- --- ---
Bidens hawaiensis Asteroideae Coreopsideae Bidens NA NA NA 2022 2.9 Gb 2n=6x=72 --- --- --- --- --- --- --- Contig --- --- ---
Bidens alba Asteroideae Coreopsideae Bidens CDS PEP GFF3 --- 3.75 Gb 2n=6x=72 --- --- --- --- --- --- --- Chromosome --- --- ---
Cosmos bipinnatus Asteroideae Coreopsideae Bidens CDS PEP GFF3 --- 79.4 Mb --- --- --- --- --- --- --- --- Chromosome --- --- ---
Dahlia pinnata Asteroideae Coreopsideae Bidens CDS PEP GFF3 --- 7.86 Gb --- --- --- --- --- --- --- --- Chromosome --- --- ---
Ambrosia artemisiifolia Asteroideae Heliantheae Ambrosia CDS PEP GFF3 2022 1.3 Gb 2n=36 --- --- --- --- --- --- --- scaffold --- --- ---
Ambrosia artemisiifolia Asteroideae Heliantheae Ambrosia NA NA NA --- 1.1 Gb --- --- --- --- --- --- --- --- chromosome --- --- ---
Ambrosia artemisiifolia Asteroideae Heliantheae Ambrosia NA NA NA --- 1.2 Gb 2n=24 --- --- --- --- --- --- --- chromosome --- --- ---
Ambrosia x helenae Asteroideae Heliantheae Ambrosia NA NA NA 2024 --- --- --- --- --- --- --- --- --- --- --- --- ---
Ambrosia x helenae Asteroideae Heliantheae Ambrosia NA NA NA --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Ambrosia trifida Asteroideae Heliantheae Ambrosia CDS PEP GFF3 2024 --- --- --- --- --- --- --- --- --- Chromosomes --- --- ---
Scalesia atractyloides Asteroideae Heliantheae Scalesia NA NA GFF3 2022 3.2 Gb 2n=4x=68 --- --- --- --- --- --- --- scaffold --- --- ---
Silphium perfoliatum Asteroideae Heliantheae Silphium NA NA NA 2018 121.7 Mb 2n=14 --- --- --- --- --- --- --- Contig --- --- ---