Overview

Welcome to AGRP

Asteraceae Genomics Bioinformatics Research Platform for Asteraceae research discovry.To construct a bioinformatics platform that can be used for multi-genome collinearity analysis of Asteraceae plants, which can analyze genome structure and function studies across species. Comprehensively open up the function of "ancestral genome-multigene collinearity-chromosomal rearrangement-functional genes" mutual search, and finally create a high-powered platform for genome research of Asteraceae plants, so that botanists can query their status in Asteraceae ancestors, homologous copies in the existing genome, chromosomal distribution, and biological processes involved by submitting gene IDs or sequences with one click.

Portals of data

499,190 Dup_genes
139 Pathway
xxxx Pair_align
xxxx Deco_Align
xxxx RNA-Seq
? Metabolo-mics

30,270 TF
157 Genome Resource
5,520 m6A
xxxx Ancestral genes
Browse
xxxx Ancestral genomes
Economic value
Search
xxxx Planting techniques

499,190 Gene annotation
65,864,439 TE
xxxx Orthogenes
xxxx Function genes
Diseases
External DB link

Quick Links

Tools quick links

Genomic related
Pairwise synteny
Hierarchical synteny
Paleo-event dating
Paleo-genome fractionation
6Gene related
Other auxiliary tools(1)
Other auxiliary tools(2)

Citation

If you use ABRF in your scientific research, please cite us:

Update log

  • Nov. 6, 2021   The "Blast visualization", which can search function annotation and position, is now available

  • Dec. 27, 2020   The "Circle" has been updated

  • Aug. 5, 2020   The "Gene families", which can search gene of Triticeae by well-stueied gene of rice, maize, and Arabidopsis, is now available

  • May. 7, 2020   The "P-index", which can show collinearity in macro-region, is now available

  • Apr. 15, 2020   The "specie_tree", which can show collinearity in micro-region, is now available

  • Nov. 6, 2020   The "Dotplot", which can search function annotation and position, is now available

  • Aug. 2, 2019   Comparative genomics research platform of early eudicots (CGRPOEE) plantform is now open