Overview

Welcome to AGRP

AGRP (Angiosperm Genome Research Platform) is a comprehensive platform dedicated to the genomic study of angiosperms, focusing on advancing our understanding of the genetic information within this plant subgroup. With a commitment to facilitating in-depth exploration of angiosperm genetic data, AGRP serves as a robust support system for plant scientists, biologists, and agricultural researchers. The platform seamlessly integrates cutting-edge gene sequencing technologies, bioinformatics analysis tools, and an extensive international collaboration network to deliver users high-quality and comprehensive genomic data along with relevant information.

Portals of data



940,454

Pathway

32,815,908

TE number

115,229

ncRNA

1,362,684

Duplication type

Currently available reference genomes and annotations
Species Abbr Chromosome number Genes number Data link References
Abrus precatorius Apr 20 24,155 Hovde BT et al.(2019)
Aeschynomene evenia Aev 20 30,827 Johan Ql et al.(2021)
Amphicarpaea edgeworthii Aed 22 27,699 Liu Y et al.(2020)
Arachis duranensis Adu 20 33,238 Bertioli DJ et al.(2016)
Arachis hypogaea Ahy 40 65,593 Bertioli DJ et al.(2019)
Arachis ipaensis Aip 20 38,608 Bertioli DJ et al.(2016)
Arachis monticola Amo 40 69,883 Yin D et al.(2018)
Cajanus cajan Cca 22 28,222 Parween S et al.(2015)
Cicer arietinum Car 16 24,711 Varshney et al.(2011)
Dalbergia odorifera Dod 20 29,344 Hong Z et al.(2020)
Glycine max Gma 40 51,824 Shen Y et al.(2018)
Glycine soja Gso 40 46,722 Xie M et al.(2019)
Lotus japonicus Lja 12 26,152 Li H et al.(2020)
Lupinus albus Lal 50 41,277 Hufnagel B et al.(2020)
Lupinus angustifolius Lan 40 29,986 Hane JK et al.(2016)
Medicago truncatula Mtr 16 31,727 Tang H et al.(2014)
Melilotus albus Mal 16 41,853 Wu F et al.(2021)
Phaseolus vulgaris Pvu 22 27,996 Vlasova A et al.(2016)
Pisum sativum Psa 14 38,312 Kreplak J et al.(2019)
Spatholobus suberectus Ssu 18 29,597 Qin S et al.(2019)
Trifolium pratense Tpr 14 33,414 De Vega JJ et al.(2015)
Trifolium subterranum Tsu 16 36,691 Hirakawa H et al.(2016)
Vigna radiata Vra 22 22,158 Kang et al.(2014)
Senna tora Sto 26 44,405 Kang SH et al.(2020)
Bauhinia variegata Bva 28 37,886 Zhong Y et al.(2022)
... ... ... ... ... ...

Citation

Update log

  • January, 2017   AGRP database officially launched, providing basic search functionality.

  • March, 2017   Introduced initial updates for angiosperms, adding gene sequence information and initiating user feedback channels.

  • June, 2017   Optimized database interface, addressed technical issues, and enhanced user experience.

  • September, 2017   Added Arabidopsis thaliana genome data, strengthened search capabilities, introduced keyword search and advanced filtering.

  • October, 2017   Released updated genome data for winter melon and mulberry, introduced data version control.

  • December, 2017   Strengthened international collaborations, integrated cotton genome data, continually improving species coverage.

  • February, 2018   Released updates for soybean and peanut, fixed annotation errors, and improved data quality.

  • June, 2018   Collaborated with international organizations, integrated cotton genome data, expanded database content.

  • July, 2018   Optimized database performance and introduced data backup systems.

  • October, 2018   Introduced basic bioinformatics tools, supporting gene prediction and sequence alignment.

  • November, 2018   Launched data download functionality, addressing database responsiveness issues.

  • January, 2019   Upgraded database architecture to support larger-scale genetic information.

  • May, 2019   Introduced new bioinformatics tools, including gene family analysis and evolutionary research features.

  • July, 2019   Expanded database diversity.

  • October, 2019   Fully upgraded database interface, optimized user interaction, and provided a more intuitive data browsing experience.

  • December, 2019   Fixed data errors and improved functional annotations.

  • February, 2020   Introduced real-time notification features to the user feedback system, increasing user engagement.

  • May, 2020   Optimized data download functionality, supporting batch downloads and customized datasets.

  • September, 2020   Further optimized database performance, strengthened data security measures, ensuring user privacy.

  • November, 2020   Collaborated with international research teams, fostering global cooperation.

  • December, 2020   Introduced advanced search functionality, supporting more precise genome data retrieval.

  • January, 2021   Updated gene sequence information and annotations.

  • April, 2021   Introduced new bioinformatics tools, including collinearity analysis and ks calculation.

  • July, 2021   Expanded database species diversity.

  • September, 2021   Upgraded database interface for an enhanced user experience.

  • November, 2021   Addressed data inconsistencies between versions.

  • January, 2022   Introduced user community features, promoting user interaction and experience sharing.

  • April, 2022   Further optimized data download functionality, supporting customized data formats and faster download speeds.

  • June, 2022   Added new species, providing a more comprehensive database content.

  • September, 2022   Further improved database performance, supporting larger-scale concurrent user access.

  • October, 2022   Provided more professional knowledge about genome research.

  • November, 2022   Expanded the research value of the database. 2023:

  • January, 2023   Updated the starting page of the database, added data visualization features.

  • April, 2023   Introduced new analysis tools.

  • June, 2023   Deepened collaborations with international research institutions, enhancing the database's comprehensiveness.

  • September, 2023   Upgraded the database interface, providing more flexible data viewing options.

  • October, 2023   Addressed known data inconsistency issues.

  • November, 2023   Further optimized data download functionality, supporting rapid export of large-scale datasets.

  • December, 2023   Collaborated with emerging research teams, expanding research fields.

  • January, 2024   Further improved database performance, strengthening support for large-scale data queries.

  • February, 2024   Facilitated closer collaboration between scientists and the AGRP platform.


Articles that have referenced this platform are

  • Nov. 6, 2022  Allopolyploidizations and highly dynamic reshuffling of paleogenome contributed to the successful establishment of Orchidaceae

  • Nov. 15, 2022  Two-step model of paleohexaploidy, reshuffling of ancient genome and plasticity of heat shock response in Asteraceae

  • Nov. 23, 2022  ・Multi-dimensional reshuffling of ancestral genome during post-polyploid diploidization shaped family